IL_6MTD_207

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_207 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2524

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6MTD|1|9|U|566
6MTD|1|9|C|567
6MTD|1|9|C|568
6MTD|1|9|A|569
*
6MTD|1|9|U|581
6MTD|1|9|U|582
6MTD|1|9|A|583
6MTD|1|9|A|584

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain YY

eS24