IL_6MTD_238

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_238 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.1213

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6MTD|1|9|C|1230
6MTD|1|9|C|1231
6MTD|1|9|U|1232
*
6MTD|1|9|G|1526
6MTD|1|9|C|1527
6MTD|1|9|G|1528

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19

Chain UU

uS10