IL_6MTD_240

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_240 not in the Motif Atlas

Geometric match to IL_5MWI_006

Geometric discrepancy: 0.1088

The information below is about IL_5MWI_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

6MTD|1|9|G|1270
6MTD|1|9|C|1271
6MTD|1|9|C|1272
*
6MTD|1|9|G|1510
6MTD|1|9|U|1511
6MTD|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

eS10

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31