IL_6MTD_244

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6MTD|1|9|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_244 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1812

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6MTD|1|9|G|1325
6MTD|1|9|U|1326
6MTD|1|9|G|1327
*
6MTD|1|9|C|1502
6MTD|1|9|C|1503

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain v

eEF2