IL_6MTD_247

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(4AC)G*CAGG

Length

7 nucleotides

Bulged bases

6MTD|1|9|A|1489

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_247 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1556

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTD|1|9|C|1336
6MTD|1|9|4AC|1337
6MTD|1|9|G|1338
*
6MTD|1|9|C|1488
6MTD|1|9|A|1489
6MTD|1|9|G|1490
6MTD|1|9|G|1491

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain DD

uS3

Chain QQ

uS9

Chain UU

uS10

Chain dd

uS14

Chain v

eEF2

Chain w

SERBP1