IL_6MTD_249

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_249 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3272

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6MTD|1|9|C|1363
6MTD|1|9|U|1364
6MTD|1|9|G|1365
6MTD|1|9|G|1366
*
6MTD|1|9|C|1373
6MTD|1|9|5MC|1374
6MTD|1|9|G|1375

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain RR

eS17