IL_6MTD_256

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_256 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0773

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6MTD|1|9|G|1604
6MTD|1|9|G|1605
6MTD|1|9|G|1606
6MTD|1|9|A|1607
6MTD|1|9|U|1608
6MTD|1|9|C|1609
6MTD|1|9|G|1610
*
6MTD|1|9|C|1629
6MTD|1|9|A|1630
6MTD|1|9|U|1631
6MTD|1|9|G|1632
6MTD|1|9|A|1633
6MTD|1|9|A|1634
6MTD|1|9|C|1635

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19