3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGCGG*CCGCC
Length
10 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6MTD|1|5|G|739
6MTD|1|5|G|740
6MTD|1|5|C|741
6MTD|1|5|G|742
6MTD|1|5|G|743
*
6MTD|1|5|C|921
6MTD|1|5|C|922
6MTD|1|5|G|922|||A
6MTD|1|5|C|922|||B
6MTD|1|5|C|923

Current chains

Chain 5
28S rRNA

Nearby chains

Chain M
eL14
Chain S
eL20

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2042 s