IL_6MTD_277

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*(7MG)UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_277 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0667

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6MTD|1|5|G|1586
6MTD|1|5|G|1587
6MTD|1|5|U|1588
6MTD|1|5|C|1589
*
6MTD|1|5|7MG|1605
6MTD|1|5|U|1606
6MTD|1|5|C|1607

Current chains

Chain 5

28S rRNA

Nearby chains

Chain j

eL37