IL_6MTD_279

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AC(B8H)*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_279 not in the Motif Atlas

Homologous match to IL_8P9A_274

Geometric discrepancy: 0.185

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTD|1|5|A|1858
6MTD|1|5|C|1859
6MTD|1|5|B8H|1860
*
6MTD|1|5|A|1874
6MTD|1|5|C|1875
6MTD|1|5|U|1876

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain F

uL30

Chain b

eL29