IL_6MTD_290

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|4466
6MTD|1|5|A|4467
6MTD|1|5|U|4468
6MTD|1|5|U|4469
6MTD|1|5|G|4470
*
6MTD|1|5|C|4485
6MTD|1|5|C|4486
6MTD|1|5|A|4487
6MTD|1|5|A|4488
6MTD|1|5|G|4489
6MTD|1|5|C|4490
6MTD|1|5|G|4491

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain H

uL6

Chain O

uL13

Chain V

uL14

Chain m

eL40