IL_6MTE_079

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6MTE|1|5|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_079 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4823

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6MTE|1|5|G|1973
6MTE|1|5|U|1974
6MTE|1|5|G|1975
6MTE|1|5|G|1976
6MTE|1|5|C|1977
*
6MTE|1|5|G|1989
6MTE|1|5|A|1990
6MTE|1|5|A|1991
6MTE|1|5|U|1992
6MTE|1|5|C|1993

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain s

uL10

Chain t

uL11