IL_6MTE_188

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_188 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2357

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6MTE|1|9|C|188
6MTE|1|9|U|189
6MTE|1|9|G|190
6MTE|1|9|A|191
6MTE|1|9|C|192
*
6MTE|1|9|G|207
6MTE|1|9|G|208
6MTE|1|9|A|209
6MTE|1|9|U|210
6MTE|1|9|G|211

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8