IL_6MTE_194

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6MTE|1|9|U|368, 6MTE|1|9|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_194 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.204

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6MTE|1|9|U|366
6MTE|1|9|U|367
6MTE|1|9|U|368
6MTE|1|9|C|369
6MTE|1|9|G|370
6MTE|1|9|A|371
*
6MTE|1|9|U|393
6MTE|1|9|G|394

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

eS8

Chain LL

uS17