IL_6MTE_229

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_229 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1986

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTE|1|9|U|1101
6MTE|1|9|G|1102
6MTE|1|9|C|1103
*
6MTE|1|9|G|1129
6MTE|1|9|G|1130
6MTE|1|9|G|1131

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain RR

eS17

Chain aa

eS26

Chain bb

eS27