IL_6MTE_236

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_236 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.11

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6MTE|1|9|G|1235
6MTE|1|9|G|1236
*
6MTE|1|9|C|1521
6MTE|1|9|A|1522
6MTE|1|9|C|1523

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain w

SERBP1