IL_6MTE_248

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

6MTE|1|9|C|1403, 6MTE|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_248 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.1999

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTE|1|9|A|1402
6MTE|1|9|C|1403
6MTE|1|9|U|1404
6MTE|1|9|A|1405
6MTE|1|9|G|1406
*
6MTE|1|9|C|1440
6MTE|1|9|U|1441
6MTE|1|9|U|1442
6MTE|1|9|C|1443
6MTE|1|9|U|1444

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10