IL_6MTE_282

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAAC*GAAC

Length

10 nucleotides

Bulged bases

6MTE|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_282 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.3161

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6MTE|1|5|G|2414
6MTE|1|5|U|2415
6MTE|1|5|G|2416
6MTE|1|5|A|2417
6MTE|1|5|A|2418
6MTE|1|5|C|2419
*
6MTE|1|5|G|2427
6MTE|1|5|A|2428
6MTE|1|5|A|2429
6MTE|1|5|C|2430

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39