IL_6MTE_298

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_298 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2451

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29223.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6MTE|1|9|OMU|116
6MTE|1|9|C|117
6MTE|1|9|C|118
6MTE|1|9|PSU|119
6MTE|1|9|U|120
6MTE|1|9|OMU|121
*
6MTE|1|9|A|343
6MTE|1|9|U|344
6MTE|1|9|U|345
6MTE|1|9|C|346
6MTE|1|9|G|347

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8