IL_6MTE_299

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUAAC*GCUAAUA(OMC)

Length

15 nucleotides

Bulged bases

6MTE|1|9|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_299 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.1731

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

6MTE|1|9|G|145
6MTE|1|9|G|146
6MTE|1|9|A|147
6MTE|1|9|U|148
6MTE|1|9|A|149
6MTE|1|9|A|150
6MTE|1|9|C|151
*
6MTE|1|9|G|167
6MTE|1|9|C|168
6MTE|1|9|U|169
6MTE|1|9|A|170
6MTE|1|9|A|171
6MTE|1|9|U|172
6MTE|1|9|A|173
6MTE|1|9|OMC|174

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain YY

eS24