IL_6MTE_301

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAUU*ACCUCGGGC

Length

14 nucleotides

Bulged bases

6MTE|1|9|U|305, 6MTE|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_301 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3892

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6MTE|1|9|G|215
6MTE|1|9|C|216
6MTE|1|9|A|217
6MTE|1|9|U|218
6MTE|1|9|U|219
*
6MTE|1|9|A|302
6MTE|1|9|C|303
6MTE|1|9|C|304
6MTE|1|9|U|305
6MTE|1|9|C|306
6MTE|1|9|G|307
6MTE|1|9|G|308
6MTE|1|9|G|309
6MTE|1|9|C|310

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8