IL_6MTE_305

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6MTE|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_305 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3936

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6MTE|1|9|G|925
6MTE|1|9|A|926
*
6MTE|1|9|U|1015
6MTE|1|9|U|1016
6MTE|1|9|U|1017

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

uS15

Chain bb

eS27