IL_6MTE_312
3D structure
- PDB id
- 6MTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTE_312 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3159
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6MTE|1|9|G|1732
6MTE|1|9|U|1733
6MTE|1|9|G|1734
6MTE|1|9|A|1735
6MTE|1|9|G|1736
*
6MTE|1|9|C|1798
6MTE|1|9|G|1799
6MTE|1|9|A|1800
6MTE|1|9|A|1801
6MTE|1|9|C|1802
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain GG
- eS6
- Chain II
- eS8
- Chain V
- uL14
- Chain W
- eL24
Coloring options: