IL_6N7P_001

3D structure

PDB id

6N7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae spliceosomal E complex (UBC4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N7P_001 not in the Motif Atlas

Geometric match to IL_4JGN_002

Geometric discrepancy: 0.12

The information below is about IL_4JGN_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6N7P|1|R|C|4
6N7P|1|R|U|5
6N7P|1|R|U|6
*
6N7P|1|r|A|3
6N7P|1|r|U|4
6N7P|1|r|G|5

Current chains

Chain R

U1 snRNA

Chain r

UBC4 pre-mRNA

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein C

Chain I

Protein LUC7