3D structure

PDB id
6N8K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAU*AUUU
Length
7 nucleotides
Bulged bases
6N8K|1|1|U|776
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N8K_025 not in the Motif Atlas
Geometric match to IL_4E48_004
Geometric discrepancy: 0.2614
The information below is about IL_4E48_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

6N8K|1|1|G|754
6N8K|1|1|A|755
6N8K|1|1|U|756
*
6N8K|1|1|A|775
6N8K|1|1|U|776
6N8K|1|1|U|777
6N8K|1|1|U|778

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain o
60S ribosomal protein L29
Chain q
60S ribosomal protein L42-A

Coloring options:


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