IL_6N8K_069
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6N8K|1|1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8K_069 not in the Motif Atlas
- Geometric match to IL_4WF9_065
- Geometric discrepancy: 0.1579
- The information below is about IL_4WF9_065
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
6N8K|1|1|A|1901
6N8K|1|1|G|1902
6N8K|1|1|U|1903
6N8K|1|1|C|1904
6N8K|1|1|G|1905
6N8K|1|1|G|1906
*
6N8K|1|1|C|2333
6N8K|1|1|U|2334
6N8K|1|1|G|2335
6N8K|1|1|U|2336
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Bud site selection protein 20
- Chain V
- 60S ribosomal protein L23-A
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