IL_6N8K_086
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUAGU*GUGGGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8K_086 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3856
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6N8K|1|1|C|2422
6N8K|1|1|U|2423
6N8K|1|1|A|2424
6N8K|1|1|G|2425
6N8K|1|1|U|2426
*
6N8K|1|1|G|2603
6N8K|1|1|U|2604
6N8K|1|1|G|2605
6N8K|1|1|G|2606
6N8K|1|1|G|2607
6N8K|1|1|G|2608
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain q
- 60S ribosomal protein L42-A
- Chain v
- 60S ribosomal export protein NMD3
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