3D structure

PDB id
6N8K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGAAUGUAG*UAUUAUAGCC
Length
19 nucleotides
Bulged bases
6N8K|1|1|U|534, 6N8K|1|1|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6N8K|1|1|G|530
6N8K|1|1|G|531
6N8K|1|1|A|532
6N8K|1|1|A|533
6N8K|1|1|U|534
6N8K|1|1|G|535
6N8K|1|1|U|536
6N8K|1|1|A|537
6N8K|1|1|G|538
*
6N8K|1|1|U|553
6N8K|1|1|A|554
6N8K|1|1|U|555
6N8K|1|1|U|556
6N8K|1|1|A|557
6N8K|1|1|U|558
6N8K|1|1|A|559
6N8K|1|1|G|560
6N8K|1|1|C|561
6N8K|1|1|C|562

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain M
60S ribosomal protein L14-A
Chain S
60S ribosomal protein L20-A

Coloring options:

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