IL_6N8K_133
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGGUAAAGCGAAUGAUUAGAGGUUCCGGG*CUUGACCUAUUCUCAAACUUUAAAUAU
- Length
- 57 nucleotides
- Bulged bases
- 6N8K|1|1|G|1001, 6N8K|1|1|U|1014, 6N8K|1|1|U|1015, 6N8K|1|1|C|1016, 6N8K|1|1|A|1036, 6N8K|1|1|A|1040, 6N8K|1|1|U|1041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8K|1|1|G|991
6N8K|1|1|A|992
6N8K|1|1|G|993
6N8K|1|1|G|994
6N8K|1|1|U|995
6N8K|1|1|A|996
6N8K|1|1|A|997
6N8K|1|1|A|998
6N8K|1|1|G|999
6N8K|1|1|C|1000
6N8K|1|1|G|1001
6N8K|1|1|A|1002
6N8K|1|1|A|1003
6N8K|1|1|U|1004
6N8K|1|1|G|1005
6N8K|1|1|A|1006
6N8K|1|1|U|1007
6N8K|1|1|U|1008
6N8K|1|1|A|1009
6N8K|1|1|G|1010
6N8K|1|1|A|1011
6N8K|1|1|G|1012
6N8K|1|1|G|1013
6N8K|1|1|U|1014
6N8K|1|1|U|1015
6N8K|1|1|C|1016
6N8K|1|1|C|1017
6N8K|1|1|G|1018
6N8K|1|1|G|1019
6N8K|1|1|G|1020
*
6N8K|1|1|C|1032
6N8K|1|1|U|1033
6N8K|1|1|U|1034
6N8K|1|1|G|1035
6N8K|1|1|A|1036
6N8K|1|1|C|1037
6N8K|1|1|C|1038
6N8K|1|1|U|1039
6N8K|1|1|A|1040
6N8K|1|1|U|1041
6N8K|1|1|U|1042
6N8K|1|1|C|1043
6N8K|1|1|U|1044
6N8K|1|1|C|1045
6N8K|1|1|A|1046
6N8K|1|1|A|1047
6N8K|1|1|A|1048
6N8K|1|1|C|1049
6N8K|1|1|U|1050
6N8K|1|1|U|1051
6N8K|1|1|U|1052
6N8K|1|1|A|1053
6N8K|1|1|A|1054
6N8K|1|1|A|1055
6N8K|1|1|U|1056
6N8K|1|1|A|1057
6N8K|1|1|U|1058
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain F
- 60S ribosomal protein L7-A
- Chain J
- 60S ribosomal protein L11-A
- Chain T
- 60S ribosomal protein L21-A
- Chain v
- 60S ribosomal export protein NMD3
Coloring options: