IL_6N8K_136
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGAUGG*CGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAUC
- Length
- 42 nucleotides
- Bulged bases
- 6N8K|1|1|C|1556, 6N8K|1|1|A|1558, 6N8K|1|1|U|1569
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8K|1|1|G|1536
6N8K|1|1|A|1537
6N8K|1|1|G|1538
6N8K|1|1|A|1539
6N8K|1|1|U|1540
6N8K|1|1|G|1541
6N8K|1|1|G|1542
*
6N8K|1|1|C|1551
6N8K|1|1|G|1552
6N8K|1|1|U|1553
6N8K|1|1|U|1554
6N8K|1|1|U|1555
6N8K|1|1|C|1556
6N8K|1|1|A|1557
6N8K|1|1|A|1558
6N8K|1|1|A|1559
6N8K|1|1|G|1560
6N8K|1|1|G|1561
6N8K|1|1|C|1562
6N8K|1|1|C|1563
6N8K|1|1|U|1564
6N8K|1|1|G|1565
6N8K|1|1|A|1566
6N8K|1|1|U|1567
6N8K|1|1|U|1568
6N8K|1|1|U|1569
6N8K|1|1|U|1570
6N8K|1|1|A|1571
6N8K|1|1|U|1572
6N8K|1|1|G|1573
6N8K|1|1|C|1574
6N8K|1|1|A|1575
6N8K|1|1|G|1576
6N8K|1|1|G|1577
6N8K|1|1|C|1578
6N8K|1|1|C|1579
6N8K|1|1|A|1580
6N8K|1|1|C|1581
6N8K|1|1|C|1582
6N8K|1|1|A|1583
6N8K|1|1|U|1584
6N8K|1|1|C|1585
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain j
- 60S ribosomal protein L37-A
Coloring options: