IL_6N8L_180

3D structure

PDB id

6N8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6N8L|1|1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8L_180 not in the Motif Atlas

Homologous match to IL_8CRE_136

Geometric discrepancy: 0.3368

The information below is about IL_8CRE_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6N8L|1|1|G|3318
6N8L|1|1|U|3319
6N8L|1|1|A|3320
*
6N8L|1|1|U|3387
6N8L|1|1|C|3388

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A