IL_6N8M_025

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_025 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1322

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6N8M|1|A|C|758
6N8M|1|A|U|759
6N8M|1|A|G|760
6N8M|1|A|A|761
6N8M|1|A|U|762
6N8M|1|A|G|763
*
6N8M|1|A|C|768
6N8M|1|A|G|769
6N8M|1|A|G|770
6N8M|1|A|A|771
6N8M|1|A|U|772
6N8M|1|A|G|773

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L42-A

Chain n

60S ribosomal protein L28