IL_6N8M_053
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAG*CGG
- Length
- 7 nucleotides
- Bulged bases
- 6N8M|1|A|A|1399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8M_053 not in the Motif Atlas
- Homologous match to IL_8C3A_064
- Geometric discrepancy: 0.5436
- The information below is about IL_8C3A_064
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6N8M|1|A|C|1397
6N8M|1|A|U|1398
6N8M|1|A|A|1399
6N8M|1|A|G|1400
*
6N8M|1|A|C|1411
6N8M|1|A|G|1412
6N8M|1|A|G|1413
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain H
- 60S ribosomal protein L6-A
- Chain r
- 60S ribosomal protein L32
Coloring options: