IL_6N8M_090

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAU*AUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_090 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3729

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6N8M|1|A|C|2444
6N8M|1|A|A|2445
6N8M|1|A|U|2446
*
6N8M|1|A|A|2500
6N8M|1|A|U|2501
6N8M|1|A|A|2502
6N8M|1|A|G|2503

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain v

60S ribosomal protein L36-A