IL_6N8M_136

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAGUG*CAUA

Length

9 nucleotides

Bulged bases

6N8M|1|B|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_136 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2013

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6N8M|1|B|U|83
6N8M|1|B|A|84
6N8M|1|B|G|85
6N8M|1|B|U|86
6N8M|1|B|G|87
*
6N8M|1|B|C|94
6N8M|1|B|A|95
6N8M|1|B|U|96
6N8M|1|B|A|97

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain I

60S ribosomal protein L7-A

Chain f

60S ribosomal protein L20-A