IL_6N8M_138

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUU*AGUGCG

Length

10 nucleotides

Bulged bases

6N8M|1|A|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_138 not in the Motif Atlas

Homologous match to IL_8P9A_467

Geometric discrepancy: 0.3639

The information below is about IL_8P9A_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.3

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

6N8M|1|A|C|175
6N8M|1|A|G|176
6N8M|1|A|U|177
6N8M|1|A|U|178
*
6N8M|1|A|A|238
6N8M|1|A|G|239
6N8M|1|A|U|240
6N8M|1|A|G|241
6N8M|1|A|C|242
6N8M|1|A|G|243

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain u

60S ribosomal protein L35-A

Chain w

60S ribosomal protein L37-A