IL_6N8M_145

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

6N8M|1|A|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_145 not in the Motif Atlas

Homologous match to IL_8P9A_288

Geometric discrepancy: 0.1432

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6N8M|1|A|U|1398
6N8M|1|A|A|1399
6N8M|1|A|G|1400
*
6N8M|1|A|C|1411
6N8M|1|A|G|1412

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain H

60S ribosomal protein L6-A

Chain r

60S ribosomal protein L32