Loop IL_6N8M

3D structure

PDB id: 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: GCGAAUGAUUAGAGGUUCCGGGGU*ACCUUGACCUAUUCUCAAAC
Length: 44 nucleotides
Bulged bases: 6N8M|1|A|G|1001, 6N8M|1|A|A|1011, 6N8M|1|A|U|1014, 6N8M|1|A|U|1015, 6N8M|1|A|C|1016, 6N8M|1|A|C|1038, 6N8M|1|A|A|1047, 6N8M|1|A|A|1048
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6N8M|1|A|G|999
6N8M|1|A|C|1000
6N8M|1|A|G|1001
6N8M|1|A|A|1002
6N8M|1|A|A|1003
6N8M|1|A|U|1004
6N8M|1|A|G|1005
6N8M|1|A|A|1006
6N8M|1|A|U|1007
6N8M|1|A|U|1008
6N8M|1|A|A|1009
6N8M|1|A|G|1010
6N8M|1|A|A|1011
6N8M|1|A|G|1012
6N8M|1|A|G|1013
6N8M|1|A|U|1014
6N8M|1|A|U|1015
6N8M|1|A|C|1016
6N8M|1|A|C|1017
6N8M|1|A|G|1018
6N8M|1|A|G|1019
6N8M|1|A|G|1020
6N8M|1|A|G|1021
6N8M|1|A|U|1022
*
6N8M|1|A|A|1030
6N8M|1|A|C|1031
6N8M|1|A|C|1032
6N8M|1|A|U|1033
6N8M|1|A|U|1034
6N8M|1|A|G|1035
6N8M|1|A|A|1036
6N8M|1|A|C|1037
6N8M|1|A|C|1038
6N8M|1|A|U|1039
6N8M|1|A|A|1040
6N8M|1|A|U|1041
6N8M|1|A|U|1042
6N8M|1|A|C|1043
6N8M|1|A|U|1044
6N8M|1|A|C|1045
6N8M|1|A|A|1046
6N8M|1|A|A|1047
6N8M|1|A|A|1048
6N8M|1|A|C|1049

Current chains

Chain A: Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B: 5S ribosomal RNA; 5S rRNA
Chain G: 60S ribosomal protein L5
Chain M: 60S ribosomal protein L11-A
Chain V: 60S ribosomal export protein NMD3
Chain g: 60S ribosomal protein L21-A

IL_6N8M_162