IL_6N8N_004
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6N8N|1|A|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_004 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.1023
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6N8N|1|A|C|31
6N8N|1|A|U|32
6N8N|1|A|G|33
6N8N|1|A|A|34
6N8N|1|A|A|35
6N8N|1|A|C|36
6N8N|1|A|U|37
6N8N|1|A|U|38
*
6N8N|1|A|A|45
6N8N|1|A|U|46
6N8N|1|A|C|47
6N8N|1|A|A|48
6N8N|1|A|A|49
6N8N|1|A|U|50
6N8N|1|A|A|51
6N8N|1|A|A|52
6N8N|1|A|G|53
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain N
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L42-A
- Chain a
- 60S ribosomal protein L15-A
- Chain n
- 60S ribosomal protein L28
- Chain w
- 60S ribosomal protein L37-A
Coloring options: