IL_6N8N_013
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6N8N|1|A|A|398, 6N8N|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_013 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1483
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6N8N|1|A|G|376
6N8N|1|A|A|377
6N8N|1|A|A|378
6N8N|1|A|C|379
*
6N8N|1|A|G|390
6N8N|1|A|A|391
6N8N|1|A|G|392
6N8N|1|A|U|393
6N8N|1|A|G|394
6N8N|1|A|A|395
6N8N|1|A|A|396
6N8N|1|A|A|397
6N8N|1|A|A|398
6N8N|1|A|A|399
6N8N|1|A|G|400
6N8N|1|A|U|401
6N8N|1|A|A|402
6N8N|1|A|C|403
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain c
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L26-A
- Chain y
- 60S ribosomal protein L39
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