IL_6N8N_018
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6N8N|1|A|A|519, 6N8N|1|A|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_018 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.1212
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N8N|1|A|G|517
6N8N|1|A|G|518
6N8N|1|A|A|519
6N8N|1|A|U|520
6N8N|1|A|A|521
6N8N|1|A|A|522
6N8N|1|A|A|523
6N8N|1|A|U|524
6N8N|1|A|C|525
*
6N8N|1|A|G|567
6N8N|1|A|G|568
6N8N|1|A|A|569
6N8N|1|A|A|570
6N8N|1|A|U|571
6N8N|1|A|A|572
6N8N|1|A|C|573
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain I
- 60S ribosomal protein L7-A
- Chain O
- 60S ribosomal protein L14-A
- Chain f
- 60S ribosomal protein L20-A
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