IL_6N8N_044
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUCAUCAGACACCACAAAA*UGAAAAUGGAUGGCGCUCAAG
- Length
- 40 nucleotides
- Bulged bases
- 6N8N|1|A|U|1191, 6N8N|1|A|C|1192, 6N8N|1|A|C|1196, 6N8N|1|A|A|1302, 6N8N|1|A|U|1305, 6N8N|1|A|C|1316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8N|1|A|C|1187
6N8N|1|A|U|1188
6N8N|1|A|C|1189
6N8N|1|A|A|1190
6N8N|1|A|U|1191
6N8N|1|A|C|1192
6N8N|1|A|A|1193
6N8N|1|A|G|1194
6N8N|1|A|A|1195
6N8N|1|A|C|1196
6N8N|1|A|A|1197
6N8N|1|A|C|1198
6N8N|1|A|C|1199
6N8N|1|A|A|1200
6N8N|1|A|C|1201
6N8N|1|A|A|1202
6N8N|1|A|A|1203
6N8N|1|A|A|1204
6N8N|1|A|A|1205
*
6N8N|1|A|U|1299
6N8N|1|A|G|1300
6N8N|1|A|A|1301
6N8N|1|A|A|1302
6N8N|1|A|A|1303
6N8N|1|A|A|1304
6N8N|1|A|U|1305
6N8N|1|A|G|1306
6N8N|1|A|G|1307
6N8N|1|A|A|1308
6N8N|1|A|U|1309
6N8N|1|A|G|1310
6N8N|1|A|G|1311
6N8N|1|A|C|1312
6N8N|1|A|G|1313
6N8N|1|A|C|1314
6N8N|1|A|U|1315
6N8N|1|A|C|1316
6N8N|1|A|A|1317
6N8N|1|A|A|1318
6N8N|1|A|G|1319
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L7-A
- Chain K
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L14-A
- Chain b
- 60S ribosomal protein L16-A
- Chain f
- 60S ribosomal protein L20-A
- Chain s
- 60S ribosomal protein L33-A
- Chain z
- Ubiquitin-60S ribosomal protein L40
Coloring options: