IL_6N8N_048

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6N8N|1|A|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_048 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1758

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6N8N|1|A|G|1262
6N8N|1|A|A|1263
6N8N|1|A|G|1264
6N8N|1|A|U|1265
6N8N|1|A|G|1266
*
6N8N|1|A|C|1275
6N8N|1|A|U|1276
6N8N|1|A|C|1277

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L

Ribosomal protein L12

Chain Y

Tyrosine-protein phosphatase YVH1