IL_6N8N_069

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6N8N|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_069 not in the Motif Atlas

Homologous match to IL_5TBW_078

Geometric discrepancy: 0.1108

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6N8N|1|A|C|1918
6N8N|1|A|G|1919
6N8N|1|A|U|1920
6N8N|1|A|A|1921
6N8N|1|A|A|1922
6N8N|1|A|C|1923
*
6N8N|1|A|G|1928
6N8N|1|A|G|1929
6N8N|1|A|A|1930
6N8N|1|A|U|1931
6N8N|1|A|A|1932
6N8N|1|A|A|1933
6N8N|1|A|G|1934

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain R

60S ribosomal protein L43-A

Chain W

Large subunit GTPase 1

Chain e

60S ribosomal protein L19-A