IL_6N8N_102

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6N8N|1|A|A|2941, 6N8N|1|A|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_102 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.2542

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6N8N|1|A|C|2881
6N8N|1|A|U|2882
*
6N8N|1|A|A|2940
6N8N|1|A|A|2941
6N8N|1|A|C|2942
6N8N|1|A|G|2943

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain V

60S ribosomal export protein NMD3

Chain i

60S ribosomal protein L23-A