IL_6N8N_129
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_129 not in the Motif Atlas
- Geometric match to IL_5TBW_373
- Geometric discrepancy: 0.1462
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N8N|1|B|G|21
6N8N|1|B|A|22
6N8N|1|B|A|23
6N8N|1|B|A|24
6N8N|1|B|G|25
6N8N|1|B|C|26
6N8N|1|B|A|27
*
6N8N|1|B|U|53
6N8N|1|B|U|54
6N8N|1|B|A|55
6N8N|1|B|A|56
6N8N|1|B|G|57
6N8N|1|B|C|58
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L11-A
Coloring options: