IL_6N8N_156

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCU*GAGA

Length

7 nucleotides

Bulged bases

6N8N|1|A|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_156 not in the Motif Atlas

Geometric match to IL_5TBW_044

Geometric discrepancy: 0.2446

The information below is about IL_5TBW_044

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6N8N|1|A|U|2127
6N8N|1|A|C|2128
6N8N|1|A|U|2129
*
6N8N|1|A|G|2323
6N8N|1|A|A|2324
6N8N|1|A|G|2325
6N8N|1|A|A|2326

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain W

Large subunit GTPase 1