IL_6N8N_157

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

6N8N|1|A|U|2205, 6N8N|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|C|2204
6N8N|1|A|U|2205
6N8N|1|A|G|2206
6N8N|1|A|A|2207
6N8N|1|A|A|2208
6N8N|1|A|U|2209
6N8N|1|A|G|2210
*
6N8N|1|A|C|2235
6N8N|1|A|G|2236
6N8N|1|A|C|2237
6N8N|1|A|G|2238

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain V

60S ribosomal export protein NMD3