3D structure

PDB id
6N8O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AU*AGUUGU
Length
8 nucleotides
Bulged bases
6N8O|1|A|U|147
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N8O_007 not in the Motif Atlas
Geometric match to IL_5TBW_007
Geometric discrepancy: 0.1503
The information below is about IL_5TBW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_19724.2
Basepair signature
cWW-L-cWW-L-cSH
Number of instances in this motif group
3

Unit IDs

6N8O|1|A|A|123
6N8O|1|A|U|124
*
6N8O|1|A|A|144
6N8O|1|A|G|145
6N8O|1|A|U|146
6N8O|1|A|U|147
6N8O|1|A|G|148
6N8O|1|A|U|149

Current chains

Chain A
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain J
60S ribosomal protein L8-A
Chain a
60S ribosomal protein L15-A

Coloring options:


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