IL_6N8O_026

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8O_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1449

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6N8O|1|A|C|758
6N8O|1|A|U|759
6N8O|1|A|G|760
6N8O|1|A|A|761
6N8O|1|A|U|762
6N8O|1|A|G|763
*
6N8O|1|A|C|768
6N8O|1|A|G|769
6N8O|1|A|G|770
6N8O|1|A|A|771
6N8O|1|A|U|772
6N8O|1|A|G|773

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L42-A

Chain n

60S ribosomal protein L28